Experimental Results on Some Test Files (Superlink v1.2)
(updated March 30th 2003)
Experiment 1: (The
pedigree topology is taken from pedigree B in Kruglyak et al., 1996, the
marker data is simulated. We used both increasing number of loci and increasing
number of untyped individuals.)
This is a complex inbred pedigree
that occurred in the study of Werner syndrome (Thompson and Wisjman 1994).
The pedigree has 15 people (with inbreeding loops). All the markers have
5-10 alleles.
pedfile (Genehunter) |
Representation (bmp) |
|
%Typed
Individuals |
LodScore |
Superlink 1.1 |
|
Vitesse |
|
dataGB_90_0/pedGB_90_0
|
|
|
|
|
|
|
|
|
dataGB_90_1/pedGB_90_1
|
|
|
|
-61.979443/-0.010976 |
|
|
|
|
dataGB_90_2/pedGB_90_2
|
|
|
|
|
|
|
|
|
dataGB_90_3/pedGB_90_3
|
|
|
|
-126.225294/-0.010976 |
|
|
|
|
dataGB_67_0/pedGB_67_0
|
|
|
|
|
1m10.478s |
|
|
|
dataGB_67_1/pedGB_67_1
|
|
|
|
-44.296082/0.196442 |
|
1m32.870s |
|
|
dataGB_67_2/pedGB_67_2
|
|
|
|
|
|
7m58.221s/ 6m4.631s |
|
|
dataGB_67_3/pedGB_67_3
|
|
|
|
|
3m11.510s |
|
|
|
dataGB_27_0/pedGB_27_0
|
|
|
|
|
|
|
|
|
dataGB_27_1/pedGB_27_1
|
|
|
|
|
|
|
|
|
dataGB_27_2/pedGB_27_2
|
|
|
|
|
|
|
|
|
dataGB_27_3/pedGB_27_3
|
|
|
|
|
|
1hr19m54.666s/
|
|
|
Experiment 2:(The pedigree topology is taken from pedigree C in Kruglyak et al., 1996, the marker data is simulated. We used both increasing number of loci and increasing number of untyped individuals.)
This pedigree has 29 people (with
no inbreeding loops). All the markers have 5-10 alleles.
pedfile (Genehunter) |
|
|
%Typed
Individuals |
LodScore |
Superlink 1.1 |
|
|
|
dataGC_86_0/pedGC_86_0
|
|
|
|
|
|
|
|
|
dataGC_86_1/pedGC_86_1
|
|
|
|
-151.800991/0.002835 |
|
|
|
|
dataGC_86_2/pedGC_86_2
|
|
|
|
|
|
|
|
|
dataGC_86_3/pedGC_86_3
|
|
|
|
|
|
|
|
|
ped_GC_69_0 |
|
|
|
-56.408059/-0.014804 |
|
|
|
|
ped_GC_69_1 |
|
|
|
|
|
|
|
|
ped_GC_69_2 |
|
|
|
-174.062217/0.033061 |
|
|
|
|
ped_GC_69_3 |
|
|
|
|
|
|
|
|
ped_GC_31_0 |
|
|
|
|
|
|
|
|
ped_GC_31_1 |
|
|
|
|
2m31.553s | 1m6.028s/21.990s/
|
|
|
ped_GC_31_2 |
|
|
|
|
|
28m42.928s |
***** |
|
ped_GC_31_3 |
|
|
|
|
|
|
Clarifications to the tables:
For the Superlink runs, in cases where there was a variance in the results, the run times of several runs are reported.