Viruses - complete genome

 

First set of parameters

Length of Palindromes (one side): 7

Maximum gap allowed: 50

Number of mismatches allowed: 0

Name

Length

No' of pal'

Expectation (formula a)

A

C

G

T

Expectation (formula b)

Chikungunya

11828

66

36.7

3517

2973

2947

2391

41.6

Omsk hemorrhagic fever

10787

42

33.5

2772

3361

2425

2229

39.9

Onion yellow dwarf

10538

44

32.7

3596

2290

1825

2827

50.0

Citrus tristeza

19293

107

59.9

4689

4873

3856

5875

69.9

Powassan

10839

54

33.6

2729

3382

2398

2330

39.6

Sulfolobus virus 1

15465

94

48.0

4639

3065

3074

4687

64.3

Marburg

19112

134

59.4

6176

3578

3757

5601

86.9

Japanese encephalitis

10963

40

34.0

3019

3118

2523

2303

37.8

Little cherry 2

15045

92

46.7

4408

3426

2719

4492

60.7

Yokose

10857

41

33.7

3255 2823 2281 2498

38.2

 

 

 

 

 

Second set of parameters

Length of Palindromes (one side): 5

Maximum gap allowed: 4

Number of mismatches allowed: 0

 

Name

Length

No' of pal'

Expectation (formula a)

A

C

G

T

Expectation (formula b)

Chikungunya

11828

50

57.7

3517

2973

2947

2391

63.1

Omsk hemorrhagic fever

10787

54

52.6

2772

3361

2425

2229

59.7

Onion yellow dwarf

10538

47

51.4

3596

2290

1825

2827

69.6

Citrus tristeza

19293

133

94.2

4689

4873

3856

5875

105.1

Powassan

10839

57

52.9

2729

3382

2398

2330

59.4

Sulfolobus virus 1

15465

103

75.5

4639

3065

3074

4687

92.9

Marburg

19112

112

93.3

6176

3578

3757

5601

122.5

Japanese encephalitis

10963

76

53.5

3019

3118

2523

2303

57.7

Little cherry 2

15045

92

73.4

4408

3426

2719

4492

88.5

Yokose

10857

70

53.0

3255

2823

2281

2498

58.0