Comparing our formula expectation with our program results - different organisms

 

organism

  calculation       considering  weights  (formula b) 

 calculation      (formula a) 

 program         

 calculation

 langth 

 gap

 mismatch 

Oryza sativa

1.00E-30

8.00E-04

0

20

3

2

 chromosome 5

8.46E-22

84

804

25

15

9

N= 123167

1.80E-21

8.00E-04

24

30

15

6

A:36694 T:35281 C:24177 G:26475

1.80E-21

14

294

20

30

5

7.00E-47

0.006

23

45

10

15

 

8.00E-20

18.5

2223

19

12

5

Saccharomyces cerevisiae

0.011995251

0.005

18

20

3

2

chromosome X

1.02E+03

5.14E+02

1797

25

15

9

N=745445

0.015542056

0.005

4

30

15

6

A:231097 C:143808 G:142211 T:228329

1.79E+02

88

526

20

30

5

0.15

0.04

9

45

10

15

 

2.15E+02

1.20E+02

589

19

12

5

Yersinia pestis (bacteria)

7.26E-05

3.80E-05

0

20

3

2

N=5919

6.627636365

4

19

25

15

9

A:1759 C:1111 G:1283 T:1766

8.72E-05

3.80E-05

0

30

15

6

1.14

0.7

10

20

30

5

 

7.80E-04

3.00E-04

0

45

10

15

 

1.4

0.9

13

19

12

5

Zaire Ebola virus

2.30E-04

1.20E-04

0

20

3

2

N=18959

21.13876911

13

37

25

15

9

A:6061 T:5111 C:3752 G:4035

2.76E-04

1.20E-04

0

30

15

6

3.65

2

14

20

30

5

 

0.002476835

1.00E-03

0

45

10

15

 

4.473194333

2.8

15

19

12

5

Escherichia coli K12

0.03

3.00E-02

23

20

3

2

N=4639221

3.20E+03

3.00E+03

8272

25

15

9

A:1142136 T:1140877 C:1176775 G:1179433

0.030415325

0.03

34

30

15

6

5.50E+02

5

3115

20

30

5

 

0.24

0.24

31

45

10

15

 

3.20E+03

7.00E+02

3633

19

12

5