Bacteriophages - complete genome

 

First set of parameters

Length of Palindromes (one side): 7

Maximum gap allowed: 50

Number of mismatches allowed: 0

Name

Length

No' of pal'

Expectation (formula a)

A

C

G

T

Expectation (formula b)

T3

38208

87

118.8

10093

10131

8935

9049

121.7

phiE125

53373

437

166.0

10376

17407

15253

10337

238.9

HK620

38297

169

119.1

10582

9227

8653

9835

123.8

Stx1 converting

59866

291

186.2

15389

16075

13675

14727

190.8

phig1e

42259

202

131.4

11126

8095

10102

12936

158.8

 phiKMV

42519

216

132.2

8783

13245

13243

7248

202.9

SPP1

44007

174

136.9

14693

11001

8232

10081

187.2

PY54

46339

295

144.1

13161

10807

9848

12523

157.8

Xanthomonas oryzae

44373

195

138.0

10460

11723

11368

10822

139.9

 A118

40834

261

127.0

14567

8282

6462

11523

235.6

   

 

 

 

 

Second set of parameters

Length of Palindromes (one side): 5

Maximum gap allowed: 4

Number of mismatches allowed: 0

 

Name

Length

No' of pal'

Expectation (formula a)

A

C

G

T

Expectation (formula b)

T3

38208

149

186.5

10093

10131

8935

9049

189.8

phiE125

53373

468

260.6

10376

17407

15253

10337

337.9

HK620

38297

181

186.9

10582

9227

8653

9835

192.2

Stx1 converting

59866

334

292.3

15389

16075

13675

14727

297.4

phig1e

42259

220

206.3

11126

8095

10102

12936

236.2

 phiKMV

42519

272

207.6

8783

13245

13243

7248

281.8

SPP1

44007

180

214.8

14693

11001

8232

10081

268.7

PY54

46339

276

226.2

13161

10807

9848

12523

241.3

Xanthomonas oryzae

44373

277

216.6

10460

11723

11368

10822

218.7

 A118

40834

246

199.3

14567

8282

6462

11523

309.9