Performance results and comparison between Superlink and Genehunter v2.1

 

 

Files

#People

#Loci

Result files

Run time (LOD + NPL Spairs,Sall), sec.

Run time Genehunter v2.1, sec.

datafile3.dat

pedfile30.dat

7

6

results30.txt

0.0

0.0

datafile3.dat

pedfile32.dat

7

6

results32.txt

0.0

0.0

datafile4.dat

pedfile42.dat

7

6

results42.txt

0.0

0.0

datafile4.dat

pedfile43.dat

7

6

results43.txt

0.0

0.0

datafile5.dat

pedfile50.dat

15

9

results50.txt

0.0

0.2

datafile5.dat

pedfile51.dat

15

9

results51.txt

1.0

1.8

datafile5.dat

pedfile52.dat

15

9

results52.txt

0.1

0.5

datafile5.dat

pedfile53.dat

15

9

results53.txt

0.1

0.5

datafile5.dat

pedfile54.dat

15

9

results54.txt

11.3

10.9

datafile6.dat

pedfile60.dat

15

99

results60.txt

0.8

2.6

datafile6.dat

pedfile61.dat

15

99

results61.txt

11.3

24.0

datafile6.dat

pedfile62.dat

15

99

results62.txt

0.0

0.3

datafile6.dat

pedfile63.dat

15

99

results63.txt

0.7

2.5

datafileGB_27_0.dat

pedfileGB_27_0_0.dat

15

1

results27_0.txt

1.3

1:00.8

datafileGB_27_1.dat

pedfileGB_27_1_0.dat

15

3

results27_1.txt

2.6

1:05.9

datafileGB_27_2.dat

pedfileGB_27_2_0.dat

15

5

results27_2.txt

3.9

1:08.3

datafileGB_27_3.dat

pedfileGB_27_3_0.dat

15

7

results27_3.txt

4.8

1:11.9

datafileGB_67_0.dat

pedfileGB_67_0_0.dat

15

1

results67_0.txt

35.4

59.8

datafileGB_67_1.dat

pedfileGB_67_1_0.dat

15

3

results67_1.txt

37.1

1:04.4

datafileGB_67_2.dat

pedfileGB_67_2_0.dat

15

5

results67_2.txt

38.0

1:06.9

datafileGB_67_3.dat

pedfileGB_67_3_0.dat

15

7

results67_3.txt

29.5

1:08.9

datafileGB_90_0.dat

pedfileGB_90_0_0.dat

15

1

results90_0.txt

6.5

1:00.2

datafileGB_90_1.dat

pedfileGB_90_1_0.dat

15

3

results90_1.txt

7.7

1:01.8

datafileGB_90_2.dat

pedfileGB_90_2_0.dat

15

5

results90_2.txt

8.5

1:03.6

datafileGB_90_3.dat

pedfileGB_90_3_0.dat

15

7

results90_3.txt

9.4

1:05.8