Sponsors Brown University McGill Centre for Bioinformatics McGill Cancer Centre University of Oslo Oslo universitetssykehus HF EACR

PROGRAM INFORMATION (and videos)

KEYNOTE SPEAKERS

CONTRIBUTED PAPERS

CONTRIBUTED ABSTRACTS

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KEYNOTE SPEAKERS
Include:

David Botstein

David Botstein (Princeton University)

Genomics, Computation, and the Nature of Biological Understanding

Joe W. Gray

Joe W. Gray (Lawrence Berkeley National Laboratory)

A systems biology approach to HER2 signaling

Rachel Karchin

Rachel Karchin (Johns Hopkins University)

High throughput annotation of somatic mutations in cancer: computational challenges

Gordon B. Mills

Gordon B. Mills (The University of Texas M. D. Anderson Cancer Center)

Systems approach to personalized medicine

Yosef Yarden

Yosef Yarden (The Weizmann Institute of Science)

Fine tuning of oncogenic signaling: coordinated networks of mRNAs and microRNAs

Alfonso Valencia

Alfonso Valencia (Spanish National Cancer Research Centre)

Protein networks in the interpretation of cancer genome data


CONTRIBUTED PAPERS

Hiroko Solvang, Ole Christian Lingjærde, Arnoldo Frigessi, Anne-Lise Børresen-Dale and Vessela Kristensen Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer

Gurkan Bebek, Vishal Patel and Mark Chance. PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus’ Signaling

Enrico Glaab, Anais Baudot, Natalio Krasnogor and Alfonso Valencia Extending pathways and processes using molecular interaction networks to analyse cancer genome data

Anna Ritz, Pamela Paris, Michael Ittmann, Colin Collins and Benjamin Raphael Detection of recurrent rearrangement breakpoints from array copy number data

CONTRIBUTED ABSTRACTS

Peter Van Loo, Silje Nordgard, Ole Christian Lingjærde, Hege Russnes, Inga Rye, Wei Sun, Victor Weigman, Peter Marynen, Anders Zetterberg, Bjørn Naume, Charles Perou, Anne-Lise Børresen-Dale and Vessela Kristensen Allele-specific copy number analysis of breast carcinomas

Natasa Przulj, Tijana Milenkovic, Oleksii Kuchaiev, Hsiang Ho, Vesna Memisevic, Aleksandar Stevanovic, Anand Ganesan and Jayavani Aruri Uncovering melanogenesis regulatory pathways from protein-protein interaction networks: the computational method and software tool

Chris D Greenman, Erin Pleasance, Scott Newmann, P. Andy Futreal, Mike Stratton, Paul Edwards, Peter Campbell Estimating rearrangement evolution in cancer with massively parallel paired end sequencing

Charlotte KY Ng, Susanna L Cooke, Kevin Howe and James D Brenton Copy number and high-throughput sequencing analysis of heterogeneity and tumour evolution in ovarian cancer

Yinyin Yuan, Oscar M. Rueda, Christina Curtis, Florian Markowetz Inferring deregulation networks of copy number driven expression in cancer sub-types

Israel Steinfeld, Espen Enerly, Kristine Kleivi, Miriam Aure, Suvi-Katri Leivonen, Roy Navon, Hilde Johnsen, Olli Kallioniemi, Vessela Kristensen, Anne-Lise Børresen-Dale and Zohar Yakhini Understanding miRNA roles in breast cancer through enrichment networks

Ali Tofigh, Francois Pepin, Nicholas Bertos, Morag Park and Michael Hallett Stromal-epithelial interactions in breast cancer using patient-matched gene expression data