Gene Regulation Simulation is based on the
computational model described in  with several extensions. It
consists of two programs. The first ("net2text") implements an
for the user and the second ("model") performs the simulations and
outputs their results.
All the information (general information, project aims,
implementation details and user guide) is included in this report.
Download examples of inputs and
outputs (the inputs are in the intermediate text format). Download meiosisInYeast.cys.
You need to install Cytoscape.
"model" to Cytoscape's folder and "net2text" to
Cytoscape's "plugins" folder.
“Faithful modeling of transient expression and
its application to elucidating negative feedback regulation”, Amir
Vyacheslav Gurevich, Zohar Kasulin-Boneh, Lilach Pnueli, Yona Kassir,