ATRHunter


 

   ATRHUNTER advanced submission form    

Input sequence 

Enter a DNA sequence consisting of the letters a, c, t, g

(For input larger than one million letters please download the ATRhunter software)

 

1.    Upload your file     2.    Cut and paste a sequence
       
Software Options

Alignment parameters (match, mismatch, gap, terminal gap)

help
Maximum motif length help
Select a definition of ATR     (help)  

    Similarity level between adjacent copies

   Average similarity level between adjacent copies

  Minimum alignment score with a repeating copy

Additional options: Information on coding regions (using genBank format)

help

 

         

 

 

Reference:

"Finding Approximate Tandem Repeats in Genomic Sequences" , Ydo Wexler, Zohar Yakhini, Yechezkel Kashi and Dan Geiger (Recomb 2004)

More information available at ATRHunter information page

Last revised December 18, 2003
Send any questions, bug reports
or comments to: ywex@cs.technion.ac.il