ATRHUNTER advanced submission form    

Input sequence 

Enter a DNA sequence consisting of the letters a, c, t, g

(For input larger than one million letters please download the ATRhunter software)


1.    Upload your file     2.    Cut and paste a sequence
Software Options

Alignment parameters (match, mismatch, gap, terminal gap)

Maximum motif length help
Select a definition of ATR     (help)  

    Similarity level between adjacent copies

   Average similarity level between adjacent copies

  Minimum alignment score with a repeating copy

Additional options: Information on coding regions (using genBank format)







"Finding Approximate Tandem Repeats in Genomic Sequences" , Ydo Wexler, Zohar Yakhini, Yechezkel Kashi and Dan Geiger (Recomb 2004)

More information available at ATRHunter information page

Last revised December 18, 2003
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